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ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd' for architecture x86_64
I am trying to build AI-Feynman https://github.com/SJ001/AI-Feynman OS X 12.4 XCode 13.4 % xcode-select -p /Library/Developer/CommandLineTools % which gfortran /Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/gfortran (AI-Feynman) davidlaxer@x86_64-apple-darwin13 AI-Feynman % gfortran --version GNU Fortran (GCC) 4.8.5 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING I am getting this error trying in link AI-Feynman: /Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -arch x86_64 -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1module.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/fortranobject.o build/temp.macosx-10.9-x86_64-3.9/aifeynman/symbolic_regress1.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1-f2pywrappers.o -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -lgfortran -o aifeynman/_symbolic_regress1.cpython-39-darwin.so ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd' for architecture x86_64 collect2: error: ld returned 1 exit status error: Command "/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -arch x86_64 -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1module.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/fortranobject.o build/temp.macosx-10.9-x86_64-3.9/aifeynman/symbolic_regress1.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1-f2pywrappers.o -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -lgfortran -o aifeynman/_symbolic_regress1.cpython-39-darwin.so" failed with exit status 1 % find /Applications/Xcode.app -name libSystem.tbd -ls 227714500 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/AppleTVOS.platform/Developer/SDKs/AppleTVOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227847317 64 -rw-r--r-- 1 root wheel 170869 Feb 21 20:37 /Applications/Xcode.app/Contents/Developer/Platforms/DriverKit.platform/Developer/SDKs/DriverKit.sdk/System/DriverKit/usr/lib/libSystem.tbd 228117342 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Developer/SDKs/iPhoneOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd find: /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Library/Developer/CoreSimulator/Profiles/Runtimes/iOS.simruntime/Contents/Resources/RuntimeRoot/private/var/mobile: Permission denied 227900857 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/WatchOS.platform/Developer/SDKs/WatchOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227872436 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 228110285 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/WatchSimulator.platform/Developer/SDKs/WatchSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227845798 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/AppleTVSimulator.platform/Developer/SDKs/AppleTVSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 228409847 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd (AI-Feynman) davidlaxer@x86_64-apple-darwin13 AI-Feynman % diff /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd
1
0
1.6k
May ’22
section __TEXT/__const address out of range for architecture x86_64
I got this error building PyTorch 1.12 on OS X Monterey 12.4, XCode 13.4 in the linker: ld: in lib/libnnpack.a(conv1x1.py.o), section __TEXT/__const address out of range for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) % clang --version Apple clang version 13.1.6 (clang-1316.0.21.2.5) Target: x86_64-apple-darwin21.5.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin % lipo -info ./build/lib/*.a Non-fat file: ./build/lib/libXNNPACK.a is architecture: x86_64 Non-fat file: ./build/lib/libasmjit.a is architecture: x86_64 Non-fat file: ./build/lib/libbenchmark.a is architecture: x86_64 Non-fat file: ./build/lib/libbenchmark_main.a is architecture: x86_64 Non-fat file: ./build/lib/libcaffe2_protos.a is architecture: x86_64 Non-fat file: ./build/lib/libclog.a is architecture: x86_64 Non-fat file: ./build/lib/libcpuinfo.a is architecture: x86_64 Non-fat file: ./build/lib/libcpuinfo_internals.a is architecture: x86_64 Non-fat file: ./build/lib/libdnnl.a is architecture: x86_64 Non-fat file: ./build/lib/libfbgemm.a is architecture: x86_64 Non-fat file: ./build/lib/libfmt.a is architecture: x86_64 Non-fat file: ./build/lib/libfoxi_loader.a is architecture: x86_64 Non-fat file: ./build/lib/libgmock.a is architecture: x86_64 Non-fat file: ./build/lib/libgmock_main.a is architecture: x86_64 Non-fat file: ./build/lib/libgtest.a is architecture: x86_64 Non-fat file: ./build/lib/libgtest_main.a is architecture: x86_64 Non-fat file: ./build/lib/libkineto.a is architecture: x86_64 Non-fat file: ./build/lib/libnnpack.a is architecture: x86_64 Non-fat file: ./build/lib/libnnpack_reference_layers.a is architecture: x86_64 Non-fat file: ./build/lib/libonnx.a is architecture: x86_64 Non-fat file: ./build/lib/libonnx_proto.a is architecture: x86_64 Non-fat file: ./build/lib/libprotobuf-lite.a is architecture: x86_64 Non-fat file: ./build/lib/libprotobuf.a is architecture: x86_64 Non-fat file: ./build/lib/libprotoc.a is architecture: x86_64 Non-fat file: ./build/lib/libpthreadpool.a is architecture: x86_64 Non-fat file: ./build/lib/libpytorch_qnnpack.a is architecture: x86_64 Non-fat file: ./build/lib/libqnnpack.a is architecture: x86_64 (base) davidlaxer@x86_64-apple-darwin13 pytorch linkText linkText Any suggestions?
0
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1.6k
May ’22
Training Top2vec Model Crashed OS X 12.3.1
Training Top2vec with embedding_batch_size=256 crashed OS X 12.3.1 tensorflow_macos 2.8.0, tensorflow_metal 0.4.0 Anaconda Python 3.8.5 % pip show tensorflow_macos WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-macos Version: 2.8.0 Summary: TensorFlow is an open source machine learning framework for everyone. Home-page: https://www.tensorflow.org/ Author: Google Inc. Author-email: packages@tensorflow.org License: Apache 2.0 Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: absl-py, astunparse, flatbuffers, gast, google-pasta, grpcio, h5py, keras, keras-preprocessing, libclang, numpy, opt-einsum, protobuf, setuptools, six, tensorboard, termcolor, tf-estimator-nightly, typing-extensions, wrapt Required-by: (tensorflow-metal) (base) davidlaxer@x86_64-apple-darwin13 top2vec % pip show tensorflow_metal WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-metal Version: 0.4.0 Summary: TensorFlow acceleration for Mac GPUs. Home-page: https://developer.apple.com/metal/tensorflow-plugin/ Author: Author-email: License: MIT License. Copyright © 2020-2021 Apple Inc. All rights reserved. Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: six, wheel Required-by: To train the model with embedding_model="universal-sentence-encoder", you'll have to download universal-sentence-encoder_4. top2vec_trained = Top2Vec(documents=papers_filtered_df.text.tolist(), split_documents=True, **embedding_batch_size=256,** embedding_model="universal-sentence-encoder", use_embedding_model_tokenizer=True, embedding_model_path="/Users/davidlaxer/Downloads/universal-sentence-encoder_4", workers=8) Here's the project: https://github.com/ddangelov/Top2Vec Here's the Jupyter notebook: https://github.com/ddangelov/Top2Vec/blob/master/notebooks/CORD-19_top2vec.ipynb You'll have to load the COVID-19 data set from Kaggle here: https://www.kaggle.com/datasets/allen-institute-for-ai/CORD-19-research-challenge I set filter size to 1,000: def filter_short(papers_df): papers_df["token_counts"] = papers_df["text"].str.split().map(len) papers_df = **papers_df[papers_df.token_counts>1000].reset_index(drop=True)** papers_df.drop('token_counts', axis=1, inplace=True) return papers_df Trace panic(cpu 8 caller 0xffffff8020d449ad): userspace watchdog timeout: no successful checkins from WindowServer in 120 seconds service: logd, total successful checkins since wake (127621 seconds ago): 12763, last successful checkin: 0 seconds ago service: WindowServer, total successful checkins since wake (127621 seconds ago): 12751, last successful checkin: 120 seconds ago service: remoted, total successful checkins since wake (127621 seconds ago): 12763, last successful checkin: 0 [Trace](https://developer.apple.com/forums/content/attachment/d17c2c9b-569b-4c1a-9c61-892ced7f785b)
2
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1.5k
Apr ’22
Deep Learning Example Chapter 11 Part 2 - Sequence Model Crashed OS X 12.3.1
I am running on an iMac 27" 2020 with an AMD Radeon Pro 5700 XT GPU. % pip show tensorflow-macos WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-macos Version: 2.8.0 Summary: TensorFlow is an open source machine learning framework for everyone. Home-page: https://www.tensorflow.org/ Author: Google Inc. Author-email: packages@tensorflow.org License: Apache 2.0 Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: absl-py, astunparse, flatbuffers, gast, google-pasta, grpcio, h5py, keras, keras-preprocessing, libclang, numpy, opt-einsum, protobuf, setuptools, six, tensorboard, termcolor, tf-estimator-nightly, typing-extensions, wrapt Required-by: (tensorflow-metal) (base) davidlaxer@x86_64-apple-darwin13 deep-learning-with-python-notebooks % pip show tensorflow-metal WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-metal Version: 0.4.0 Summary: TensorFlow acceleration for Mac GPUs. Home-page: https://developer.apple.com/metal/tensorflow-plugin/ Author: Author-email: License: MIT License. Copyright © 2020-2021 Apple Inc. All rights reserved. Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: six, wheel Required-by: Here's the code in a Jupyter Notebook: https://github.com/fchollet/deep-learning-with-python-notebooks/blob/master/chapter11_part02_sequence-models.ipynb Monterey crashed in Epoch 1 of training: callbacks = [ keras.callbacks.ModelCheckpoint("one_hot_bidir_lstm.keras", save_best_only=True) ] model.fit(int_train_ds, validation_data=int_val_ds, epochs=10, callbacks=callbacks) model = keras.models.load_model("one_hot_bidir_lstm.keras") print(f"Test acc: {model.evaluate(int_test_ds)[1]:.3f}") Epoch 1/10 2022-04-01 08:55:17.903921: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 2022-04-01 08:55:18.427409: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 2022-04-01 08:55:18.463345: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 2022-04-01 08:55:32.254473: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 2022-04-01 08:55:32.276648: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 3/625 [..............................] - ETA: 2:03:10 - loss: nan - accuracy: 0.5000 Kernel Panic
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737
Apr ’22
Deep Learning Chapter 10: Advanced use of recurrent neural networks not Using GPU
I am running a recurrent neural network example on an iMac 27" with an AMD Radeon Pro 5700 XT on OS X 12.3. The code runs, the GPU was initialized the GPU is not active. Each epoch takes: 819/819 [==============================] - 32417s 40s/step - loss: 121.7538 - mae: 8.9641 - val_loss: 100.3145 - val_mae: 8.0313 % python chapter-10.py ['"Date Time"', '"p (mbar)"', '"T (degC)"', '"Tpot (K)"', '"Tdew (degC)"', '"rh (%)"', '"VPmax (mbar)"', '"VPact (mbar)"', '"VPdef (mbar)"', '"sh (g/kg)"', '"H2OC (mmol/mol)"', '"rho (g/m**3)"', '"wv (m/s)"', '"max. wv (m/s)"', '"wd (deg)"'] 420451 num_train_samples: 210225 num_val_samples: 105112 num_test_samples: 105114 2022-03-28 18:28:59.988516: I tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: SSE4.2 AVX AVX2 FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. Metal device set to: AMD Radeon Pro 5700 XT systemMemory: 128.00 GB maxCacheSize: 7.99 GB 2022-03-28 18:28:59.989242: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:305] Could not identify NUMA node of platform GPU ID 0, defaulting to 0. Your kernel may not have been built with NUMA support. 2022-03-28 18:28:59.989616: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:271] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 0 MB memory) -> physical PluggableDevice (device: 0, name: METAL, pci bus id: <undefined>) WARNING:tensorflow:Layer lstm will not use cuDNN kernels since it doesn't meet the criteria. It will use a generic GPU kernel as fallback when running on GPU. Epoch 1/50 2022-03-28 18:29:02.342296: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 819/819 [==============================] - ETA: 0s - loss: 121.7538 - mae: 8.9641 2022-03-29 03:21:02.092397: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:113] Plugin optimizer for device_type GPU is enabled. 819/819 [==============================] - 32417s 40s/step - loss: 121.7538 - mae: 8.9641 - val_loss: 100.3145 - val_mae: 8.0313 Epoch 2/50 381/819 [============>.................] - ETA: 4:50:31 - loss: 93.7597 - mae: 7.6880 from tensorflow import keras from tensorflow.keras import layers num_features = 14 steps = 120 import os fname = os.path.join("jena_climate_2009_2016.csv") with open(fname) as f: data = f.read() lines = data.split("\n") header = lines[0].split(",") lines = lines[1:] print(header) print(len(lines)) import numpy as np temperature = np.zeros((len(lines),)) raw_data = np.zeros((len(lines), len(header) - 1)) for i, line in enumerate(lines): values = [float(x) for x in line.split(",")[1:]] temperature[i] = values[1] raw_data[i, :] = values[:] sampling_rate = 6 sequence_length = 120 delay = sampling_rate * (sequence_length + 24 - 1) batch_size = 256 num_train_samples = int(0.5 * len(raw_data)) num_val_samples = int(0.25 * len(raw_data)) num_test_samples = len(raw_data) - num_train_samples - num_val_samples print("num_train_samples:", num_train_samples) print("num_val_samples:", num_val_samples) print("num_test_samples:", num_test_samples) train_dataset = keras.utils.timeseries_dataset_from_array( raw_data[:-delay], targets=temperature[delay:], sampling_rate=sampling_rate, sequence_length=sequence_length, shuffle=True, batch_size=batch_size, start_index=0, end_index=num_train_samples) val_dataset = keras.utils.timeseries_dataset_from_array( raw_data[:-delay], targets=temperature[delay:], sampling_rate=sampling_rate, sequence_length=sequence_length, shuffle=True, batch_size=batch_size, start_index=num_train_samples, end_index=num_train_samples + num_val_samples) test_dataset = keras.utils.timeseries_dataset_from_array( raw_data[:-delay], targets=temperature[delay:], sampling_rate=sampling_rate, sequence_length=sequence_length, shuffle=True, batch_size=batch_size, start_index=num_train_samples + num_val_samples) inputs = keras.Input(shape=(steps, num_features)) x = layers.SimpleRNN(16, return_sequences=True)(inputs) x = layers.SimpleRNN(16, return_sequences=True)(x) outputs = layers.SimpleRNN(16)(x) inputs = keras.Input(shape=(sequence_length, raw_data.shape[-1])) x = layers.LSTM(32, recurrent_dropout=0.25)(inputs) x = layers.Dropout(0.5)(x) outputs = layers.Dense(1)(x) model = keras.Model(inputs, outputs) callbacks = [ keras.callbacks.ModelCheckpoint("jena_lstm_dropout.keras", save_best_only=True) ] model.compile(optimizer="rmsprop", loss="mse", metrics=["mae"]) history = model.fit(train_dataset, epochs=50, validation_data=val_dataset, callbacks=callbacks) Any idea why the GPU is not active? How does this code example run on an M1 Ultra?
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1.2k
Mar ’22
Deep Learning with Python Chapter 12 Part 5.
I am using a 2022 Intel based iMac 27" with an AMD Radeon Pro GPU running OS X Monterey 12.3 Beta. I am working with Francois Chollet's GAN example: https://github.com/fchollet/deep-learning-with-python-notebooks/blob/master/chapter12_part05_gans.ipynb Here is my tensorflow-metal environment: Package Version Editable project location ---------------------------- ---------- ---------------------------- ... Send2Trash 1.8.0 sentence-transformers 2.1.0 sentencepiece 0.1.96 setuptools 47.1.0 shap 0.40.0 six 1.15.0 slicer 0.0.7 smart-open 5.2.1 sniffio 1.2.0 soupsieve 2.3.1 sympy 1.9 tables 3.6.1 tabulate 0.8.9 tbb 2021.5.0 tbb-devel 2021.5.0 tenacity 8.0.1 tensorboard 2.6.0 tensorboard-data-server 0.6.1 tensorboard-plugin-profile 2.5.0 tensorboard-plugin-wit 1.8.0 tensorflow 2.6.0 tensorflow-addons 0.14.0 tensorflow-consciousness 0.1 tensorflow-datasets 4.4.0 tensorflow-estimator 2.7.0 tensorflow-gan 2.1.0 tensorflow-hub 0.12.0 tensorflow-io-gcs-filesystem 0.22.0 tensorflow-macos 2.7.0 tensorflow-metadata 1.2.0 tensorflow-metal 0.3.0 tensorflow-probability 0.14.1 tensorflow-similarity 0.13.45 tensorflow-text 2.7.3 termcolor 1.1.0 terminado 0.12.1 testpath 0.5.0 threadpoolctl 3.0.0 tokenizers 0.10.3 toml 0.10.2 top2vec 1.0.26 torch 1.10.1 torchvision 0.11.2 tornado 6.1 tqdm 4.62.3 traitlets 5.1.0 transformers 4.11.3 typeguard 2.13.0 typing-extensions 3.7.4.3 umap-learn 0.5.1 urllib3 1.26.7 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.2.1 Werkzeug 2.0.2 wheel 0.37.0 widgetsnbextension 4.0.0b0 wordcloud 1.8.1 wrapt 1.12.1 xgboost 1.5.1 zipp 3.6.0 (tensorflow-metal) (base) davidlaxer@x86_64-apple-darwin13 ~ % The Keras Adam optimizer crashes tensorflow. The SGD optimzer runs but the GAN generates a single color block image. The Adagrad optimizer runs but also generates a one color block image. Here is output: To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2022-02-04 07:36:35.810367: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:305] Could not identify NUMA node of platform GPU ID 0, defaulting to 0. Your kernel may not have been built with NUMA support. 2022-02-04 07:36:35.810606: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:271] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 0 MB memory) -> physical PluggableDevice (device: 0, name: METAL, pci bus id: <undefined>) Metal device set to: AMD Radeon Pro 5700 XT 2022-02-04 07:36:38.833846: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. Example output image: The code ran for 4 days and completed with no errors, however, the images were always single color blocks. I tried running with the Adam optimizer on the CPU but it was too slow.
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771
Feb ’22
Process finished with exit code 139 (interrupted by signal 11: SIGSEGV)
I am getting a segmentation violation in Tensorflow running the Top2vec model. https://github.com/ddangelov/Top2Vec Here's my code snippet: import sys import faulthandler import numpy as np import pandas as pd import json import os import ipywidgets as widgets from IPython.display import clear_output, display from top2vec import Top2Vec faulthandler.enable(file=sys.stderr, all_threads=True) def filter_short(papers_df): papers_df["token_counts"] = papers_df["text"].str.split().map(len) papers_df = papers_df[papers_df.token_counts > 50].reset_index(drop=True) papers_df.drop('token_counts', axis=1, inplace=True) return papers_df papers_prepared_df = pd.read_feather("/Users/davidlaxer/Downloads/archive/covid19_papers_processed.feather") papers_feathered_filtered_df = filter_short(papers_prepared_df) top2vec_trained = Top2Vec(documents=papers_feathered_filtered_df.text.tolist(), embedding_model="universal-sentence-encoder", use_embedding_model_tokenizer=True, embedding_model_path="/Users/davidlaxer/Downloads/universal-sentence-encoder_4/", workers=4) Here's the stack trace: /Users/davidlaxer/tensorflow-metal/bin/python /Users/davidlaxer/Top2Vec/notebooks/test1.py 2021-12-24 08:50:04,782 - top2vec - INFO - Pre-processing documents for training /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/sklearn/utils/deprecation.py:87: FutureWarning: Function get_feature_names is deprecated; get_feature_names is deprecated in 1.0 and will be removed in 1.2. Please use get_feature_names_out instead. warnings.warn(msg, category=FutureWarning) 2021-12-24 08:51:37,701 - top2vec - INFO - Loading universal-sentence-encoder model at /Users/davidlaxer/Downloads/universal-sentence-encoder_4/ 2021-12-24 08:51:37.837087: I tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2021-12-24 08:51:37.838170: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:305] Could not identify NUMA node of platform GPU ID 0, defaulting to 0. Your kernel may not have been built with NUMA support. 2021-12-24 08:51:37.838380: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:271] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 0 MB memory) -> physical PluggableDevice (device: 0, name: METAL, pci bus id: <undefined>) Metal device set to: AMD Radeon Pro 5700 XT systemMemory: 128.00 GB maxCacheSize: 7.99 GB 2021-12-24 08:51:39.764518: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-12-24 08:51:41,157 - top2vec - INFO - Creating joint document/word embedding 2021-12-24 08:51:41.241496: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. Fatal Python error: Segmentation fault Thread 0x000000010c32a600 (most recent call first): File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/execute.py", line 58 in quick_execute File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/function.py", line 598 in call File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/function.py", line 1959 in _call_flat File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/function.py", line 3130 in __call__ File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py", line 949 in _call File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py", line 910 in __call__ File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/util/traceback_utils.py", line 150 in error_handler File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/tensorflow/python/saved_model/load.py", line 701 in _call_attribute File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/top2vec/Top2Vec.py", line 538 in _embed_documents File "/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/top2vec/Top2Vec.py", line 344 in __init__ File "/Users/davidlaxer/Top2Vec/notebooks/test1.py", line 24 in <module> Process finished with exit code 139 (interrupted by signal 11: SIGSEGV) This is likely related to: https://github.com/ddangelov/Top2Vec/issues/232 However, SIGSEGV indicates some other problem(s). % python --version Python 3.8.5 % pip show tensorflow_macos Name: tensorflow-macos Version: 2.7.0 Summary: TensorFlow is an open source machine learning framework for everyone. Home-page: https://www.tensorflow.org/ Author: Google Inc. Author-email: packages@tensorflow.org License: Apache 2.0 Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: absl-py, astunparse, flatbuffers, gast, google-pasta, grpcio, h5py, keras, keras-preprocessing, libclang, numpy, opt-einsum, protobuf, six, tensorboard, tensorflow-estimator, tensorflow-io-gcs-filesystem, termcolor, typing-extensions, wheel, wrapt Required-by: % pip show tensorflow_metal Name: tensorflow-metal Version: 0.3.0 Summary: TensorFlow acceleration for Mac GPUs. Home-page: https://developer.apple.com/metal/tensorflow-plugin/ Author: Author-email: License: MIT License. Copyright © 2020-2021 Apple Inc. All rights reserved. Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: six, wheel Required-by:
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Some resource has been exhausted. For example, this error might be raised if a per-user quota is exhausted, or perhaps the entire file system is out of space. @@__init__ 2 root error(s) found. (0) RESOURCE_EXHAUSTED: OOM when allocating
In a tensorflow-metal virtual environment on OS X 12.1: tensorboard 2.6.0 tensorboard-data-server 0.6.1 tensorboard-plugin-profile 2.5.0 tensorboard-plugin-wit 1.8.0 tensorflow 2.6.0 tensorflow-addons 0.14.0 tensorflow-consciousness 0.1 tensorflow-datasets 4.4.0 tensorflow-estimator 2.7.0 tensorflow-gan 2.1.0 tensorflow-hub 0.12.0 tensorflow-io-gcs-filesystem 0.22.0 tensorflow-macos 2.7.0 tensorflow-metadata 1.2.0 tensorflow-metal 0.3.0 tensorflow-probability 0.14.1 tensorflow-similarity 0.13.45 tensorflow-text 2.7.3 Running the Top2vec model: https://github.com/ddangelov/Top2Vec import numpy as np import pandas as pd import json import os import ipywidgets as widgets from IPython.display import clear_output, display from top2vec import Top2Vec papers_prepared_df = pd.read_feather("/Users/davidlaxer/Downloads/archive/covid19_papers_processed.feather") top2vec_trained = Top2Vec(documents=papers_prepared_df.text.tolist(), embedding_model="universal-sentence-encoder", use_embedding_model_tokenizer=True, embedding_model_path="/Users/davidlaxer/Downloads/universal-sentence-encoder_4/", workers=4) 2021-12-20 06:30:52,188 - top2vec - INFO - Pre-processing documents for training /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/sklearn/utils/deprecation.py:87: FutureWarning: Function get_feature_names is deprecated; get_feature_names is deprecated in 1.0 and will be removed in 1.2. Please use get_feature_names_out instead. warnings.warn(msg, category=FutureWarning) 2021-12-20 06:31:57,351 - top2vec - INFO - Loading universal-sentence-encoder model at /Users/davidlaxer/Downloads/universal-sentence-encoder_4 2021-12-20 06:31:57.488459: I tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2021-12-20 06:31:57.489288: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:305] Could not identify NUMA node of platform GPU ID 0, defaulting to 0. Your kernel may not have been built with NUMA support. 2021-12-20 06:31:57.489490: I tensorflow/core/common_runtime/pluggable_device/pluggable_device_factory.cc:271] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 0 MB memory) -> physical PluggableDevice (device: 0, name: METAL, pci bus id: <undefined>) Metal device set to: AMD Radeon Pro 5700 XT 2021-12-20 06:31:59.447260: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-12-20 06:32:00,841 - top2vec - INFO - Creating joint document/word embedding 2021-12-20 06:32:00.923838: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. Some resource has been exhausted. For example, this error might be raised if a per-user quota is exhausted, or perhaps the entire file system is out of space. @@__init__ 2 root error(s) found. (0) RESOURCE_EXHAUSTED: OOM when allocating tensor with shape[114389,320] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator Simple allocator [[{{node EncoderDNN/EmbeddingLookup/EmbeddingLookupUnique/GatherV2}}]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. [[StatefulPartitionedCall/StatefulPartitionedCall/EncoderDNN/EmbeddingLookup/EmbeddingLookupUnique/Reshape_1/_188]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. (1) RESOURCE_EXHAUSTED: OOM when allocating tensor with shape[114389,320] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator Simple allocator [[{{node EncoderDNN/EmbeddingLookup/EmbeddingLookupUnique/GatherV2}}]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. ... I tried adjusting the batchsize (e.g - 500, 100, 50, 10, 5).
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Resource exhausted: OOM when allocating tensor with shape[256,384,3072] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator Simple allocator
I measured a significant performance difference running the 'keras-io' example 'text_extraction_with_bert.ipynb' on Google Colab and my tensorflow_metal GPU (AMD Radeon Pro 5700 XT). Google Colab Pro w/TPU finished 3 epochs in 11 minutes, while tensorflow_metal ran for many hours for 1 epoch. So, I tried to profile the model in both environments. I was able to profile text_extraction_with_bert.ipynb on Google Colab Pro, but not on tensorflow_metal. My Mac has 128gb ... the OOM exception happened when the Python 3.8 process got to ~85GB. ResourceExhaustedError: 2 root error(s) found. (0) Resource exhausted: OOM when allocating tensor with shape[256,384,3072] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator Simple allocator [[node model/tf_bert_model/bert/encoder/layer_._6/intermediate/Gelu/add (defined at Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/transformers/models/bert/modeling_tf_bert.py:354) ]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. [[model/tf_bert_model/bert/encoder/layer_._7/attention/output/dense/Tensordot/Prod/_632]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. (1) Resource exhausted: OOM when allocating tensor with shape[256,384,3072] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator Simple allocator [[node model/tf_bert_model/bert/encoder/layer_._6/intermediate/Gelu/add (defined at Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages/transformers/models/bert/modeling_tf_bert.py:354) ]] Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info. This isn't available when running in Eager mode. 0 successful operations. 0 derived errors ignored. [Op:__inference_train_function_24748] Function call stack: train_function -> train_function Here's the model: https://github.com/keras-team/keras-io/blob/master/examples/nlp/ipynb/text_extraction_with_bert.ipynb
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[MPSGraph adamUpdateWithLearningRateTensor:beta1Tensor:beta2Tensor:epsilonTensor:beta1PowerTensor:beta2PowerTensor:valuesTensor:momentumTensor:velocityTensor:gradientTensor:name:]: unrecognized selector sent to instance 0x600000eede10
I am running tensorflow-macos and tensorflow-metal version 2.6 on Monterey Beta (21A5543b) on an iMac 27" 2021 with an AMD Radeon GPU. I got the following error training the model VariationalDeepSemanticHashing e.g. 2021-10-09 13:05:14.521286: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-10-09 13:05:27.092823: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-10-09 13:05:27.153 python[6315:1459657] -[MPSGraph adamUpdateWithLearningRateTensor:beta1Tensor:beta2Tensor:epsilonTensor:beta1PowerTensor:beta2PowerTensor:valuesTensor:momentumTensor:velocityTensor:gradientTensor:name:]: unrecognized selector sent to instance 0x600000eede10 [I 2021-10-09 13:05:28.157 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (1/5), keep random ports kernel d25e6066-74f7-4b4a-b5e7-b2911e7501d9 restarted https://github.com/unsuthee/VariationalDeepSemanticHashing/blob/master/Run_Experiment_Unsupervised.ipynb Here's the repository: https://github.com/unsuthee/VariationalDeepSemanticHashing
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No supported GPU was found.
I just recreated my tensorflow-metal virtual environment on OS X 11.6. Now, when I import tensorflow, I am getting: No supported GPU was found. My AMD GPU worked in the prior versions of OS X 11.6. Do the latest versions require OS X 12? % ipython Python 3.8.5 (default, Sep 4 2020, 02:22:02) Type 'copyright', 'credits' or 'license' for more information IPython 7.28.0 -- An enhanced Interactive Python. Type '?' for help. In [1]: import tensorflow No supported GPU was found. % pip list Package Version ------------------------ --------- absl-py 0.12.0 anyio 3.3.2 appnope 0.1.2 argon2-cffi 21.1.0 astunparse 1.6.3 attrs 21.2.0 Babel 2.9.1 backcall 0.2.0 bleach 4.1.0 bokeh 2.3.3 cachetools 4.2.4 certifi 2021.5.30 cffi 1.14.6 charset-normalizer 2.0.6 clang 5.0 cloudpickle 2.0.0 cycler 0.10.0 Cython 0.29.24 debugpy 1.5.0 decorator 5.1.0 defusedxml 0.7.1 dill 0.3.4 distinctipy 1.1.5 dm-tree 0.1.6 entrypoints 0.3 flatbuffers 1.12 future 0.18.2 gast 0.4.0 gensim 3.8.3 google-auth 1.35.0 google-auth-oauthlib 0.4.6 google-pasta 0.2.0 googleapis-common-protos 1.53.0 grpcio 1.41.0 h5py 3.1.0 hdbscan 0.8.27 idna 3.2 importlib-resources 5.2.2 ipykernel 6.4.1 ipython 7.28.0 ipython-genutils 0.2.0 ipywidgets 7.6.5 jedi 0.18.0 Jinja2 3.0.2 joblib 1.1.0 json5 0.9.6 jsonschema 4.0.1 jupyter-client 7.0.6 jupyter-core 4.8.1 jupyter-server 1.11.1 jupyterlab 3.1.18 jupyterlab-pygments 0.1.2 jupyterlab-server 2.8.2 jupyterlab-widgets 1.0.2 keras 2.6.0 Keras-Preprocessing 1.1.2 kiwisolver 1.3.2 llvmlite 0.37.0 Markdown 3.3.4 MarkupSafe 2.0.1 matplotlib 3.4.3 matplotlib-inline 0.1.3 mistune 0.8.4 nbclassic 0.3.2 nbclient 0.5.4 nbconvert 6.2.0 nbformat 5.1.3 nest-asyncio 1.5.1 nmslib 2.1.1 notebook 6.4.4 numba 0.54.0 numpy 1.20.3 oauthlib 3.1.1 opt-einsum 3.3.0 packaging 21.0 pandas 1.3.3 pandocfilters 1.5.0 parso 0.8.2 pexpect 4.8.0 pickleshare 0.7.5 Pillow 8.3.2 pip 21.2.4 prometheus-client 0.11.0 promise 2.3 prompt-toolkit 3.0.20 protobuf 3.18.1 psutil 5.8.0 ptyprocess 0.7.0 pyasn1 0.4.8 pyasn1-modules 0.2.8 pybind11 2.6.1 pycparser 2.20 Pygments 2.10.0 pynndescent 0.5.4 pyparsing 2.4.7 pyrsistent 0.18.0 python-dateutil 2.8.2 pytz 2021.3 PyYAML 5.4.1 pyzmq 22.3.0 requests 2.26.0 requests-oauthlib 1.3.0 requests-unixsocket 0.2.0 rsa 4.7.2 scikit-learn 1.0 scipy 1.7.1 Send2Trash 1.8.0 setuptools 47.1.0 six 1.15.0 smart-open 5.2.1 sniffio 1.2.0 tabulate 0.8.9 tensorboard 2.6.0 tensorboard-data-server 0.6.1 tensorboard-plugin-wit 1.8.0 tensorflow 2.6.0 tensorflow-consciousness 0.1 tensorflow-datasets 4.4.0 tensorflow-estimator 2.6.0 tensorflow-gan 2.1.0 tensorflow-hub 0.12.0 tensorflow-macos 2.6.0 tensorflow-metadata 1.2.0 tensorflow-metal 0.2.0 tensorflow-probability 0.14.1 tensorflow-similarity 0.13.45 tensorflow-text 2.6.0 termcolor 1.1.0 terminado 0.12.1 testpath 0.5.0 threadpoolctl 3.0.0 top2vec 1.0.26 tornado 6.1 tqdm 4.62.3 traitlets 5.1.0 typing-extensions 3.7.4.3 umap-learn 0.5.1 urllib3 1.26.7 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.2.1 Werkzeug 2.0.2 wheel 0.37.0 widgetsnbextension 3.5.1 wordcloud 1.8.1 wrapt 1.12.1 zipp 3.6.0
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Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY
[I am running Top2vec on Big Sur 11.6 with tensorflow-macos and tensorflow-metal. Python crashed ... linkText Crashed Thread: 0 Dispatch queue: metal gpu stream Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: /System/Volumes/Data/SWE/macOS/BuildRoots/38cf1d983f/Library/Caches/com.apple.xbs/Sources/MetalPerformanceShaders/MetalPerformanceShaders-124.6.1/MPSCore/Utility/MPSCommandBufferImageCache.mm:1386: failed assertion `Failed to allocate private MTLBuffer for size 421888000 Crash Log
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