I faced the same issue while uploading ionic3 app on testflight.
After exploring I found the blog "Understanding ITMS-90809: UIWebView API Deprecation" by Matt Netkow,
following the mentioned steps resolves the issue.
Remove the ios platform using cmd:
ionic cordova platform rm ios
2. Check plugin cordova-plugin-ionic-webview in package.json file. If not included then add plugin using cmd:
ionic cordova plugin add cordova-plugin-ionic-webview
3. Add the ios platform with version 5.1.0 using cmd:
ionic cordova platform add ios@~5.1.0
4. Check <preference name="WKWebViewOnly" value="true" /> in config file. if not present then add it.
5. Run cmd:
npm i
6. Run cmd
ionic cordova build ios
Then open project in xcode and archive the build.
Hope this will help you in uploading the ionic3 app build on testflight.