Same problems here. Ever since installing Sonoma, I have to unplug and replug my USB-C hub to start charging through it. It's a little bit annoying, I have to say.
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What worked for me is described in this issue:
https://github.com/flutter/flutter/issues/123852
The gist of it is that you change a line in this file : ios/Pods/Targets Support Files/Pods-Runner/Pods-Runner-frameworks.sh
from
source="$(readlink "${source}")"
to
source="$(readlink -f "${source}")"
I hope the next flutter version will address this and this won't be necessary anymore. This fix is for Flutter 3.7.9