I applied the Managed Open In restrictions and they are not working.
Bundle ID cannot be passed via custom URL scheme as it is invoked from a Webpage. Since the Webpage is not aware of the application it is running in, it cannot send the source bundle identifier while invoking the custom URL scheme.
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Sorry, there is a mistake in the above description. We do not use the Install Enterprise app command. Instead, we use the Install an App command with the ManifestURL supplied in the command
I set allowOpenFromManagedToUnmanaged and allowOpenFromUnmanagedToManaged to false, but this did not work, as unmanaged applications can still invoke the URL schemes of managed applications.