1) is there a plan for Apple to change their certificate generation process so that they are signed with a SHA-2 hash?
Currently, they're signed with a SHA-1 hash (using RSA encryption)
2) If not, then is there a way to generate / update certificates manually so that they use a SHA-2 hash?
"Certificate" : By this, I mean the the iOS development and distribution provisioning profiles. I've noticed that my iOS developer certificate is signed with SHA-256, which is a SHA-2 family hash.
The reason I ask is that I'm developing an app for distribution to another business/enterprise, but they have just announced that:
[Their company] is working on a project to identify all mobile applications utilizing certificate authorities using the SHA-1 hashing algorithm. ... [Their company is going to] dis-allow the use of SHA-1 completely after 12/31/2016. Therefore, certificate authorities should no longer sign newly generated certificates using the SHA-1 hashing algorithm. [Their company's] developers and sponsors must ensure that their certificate authorities are using the SHA-2 hashing algorithm to obtain SHA-2 certificates from their certificate authorities.