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Isn't this the one where you have to remove the IDESourceControlKnownSSHHostsDefaultsKey key from ~/Library/Preferences/com.apple.dt.Xcode.plist ? IIRC I had to do this after upgrading to 13.x.
https://forums.swift.org/t/according-to-xcode-the-identity-of-a-repository-hosted-on-github-com-has-changed/53560/6