I had the same issue and even after installing the newest SF Pro fonts the error kept popping up. The problem was that I had installed the newest fonts for all users (/Library/Fonts) but had previously installed the fonts for my user only (~/Library/Fonts). The fonts for users override the fonts for all users. Removing my user's fonts solved the issue.
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I had the same issue and even after installing the newest SF Pro fonts the error kept popping up. The problem was that I had installed the newest fonts for all users (/Library/Fonts) but had previously installed the fonts for my user only (~/Library/Fonts). The fonts for users override the fonts for all users. Removing my user's fonts solved the issue.